HL_6T83_224

3D structure

PDB id

6T83 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast disome (di-ribosome) stalled on poly(A) tract.

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6T83|1|a|G|1243, 6T83|1|a|G|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6T83_224 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.3003

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6T83|1|a|A|1238
6T83|1|a|U|1239
6T83|1|a|U|1240
6T83|1|a|G|1241
6T83|1|a|A|1242
6T83|1|a|G|1243
6T83|1|a|A|1244
6T83|1|a|G|1245
6T83|1|a|C|1246
6T83|1|a|U|1247

Current chains

Chain a

18S rRNA

Nearby chains

Chain 4

40S ribosomal protein S29-A

Chain 6

Ubiquitin-40S ribosomal protein S31

Chain q

40S ribosomal protein S15