HL_6TB3_028

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUUGAGAGCU

Length

10 nucleotides

Bulged bases

6TB3|1|2|G|1243

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_028 not in the Motif Atlas

Homologous match to HL_4V88_213

Geometric discrepancy: 0.1847

The information below is about HL_4V88_213

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6TB3|1|2|A|1238
6TB3|1|2|U|1239
6TB3|1|2|U|1240
6TB3|1|2|G|1241
6TB3|1|2|A|1242
6TB3|1|2|G|1243
6TB3|1|2|A|1244
6TB3|1|2|G|1245
6TB3|1|2|C|1246
6TB3|1|2|U|1247

Current chains

Chain 2

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1), rRNA

Nearby chains

Chain E

40S ribosomal protein S15

Chain M

40S ribosomal protein S29-A

Chain N

Ubiquitin-40S ribosomal protein S31