HL_6TB3_057

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6TB3|1|BQ|U|879, 6TB3|1|BQ|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_057 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0674

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6TB3|1|BQ|A|876
6TB3|1|BQ|C|877
6TB3|1|BQ|G|878
6TB3|1|BQ|U|879
6TB3|1|BQ|G|880
6TB3|1|BQ|C|881
6TB3|1|BQ|A|882
6TB3|1|BQ|A|883
6TB3|1|BQ|A|884
6TB3|1|BQ|U|885

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain AX

60S ribosomal protein L17-A

Chain BA

60S ribosomal protein L3