HL_6TB3_061

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

6TB3|1|BQ|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_061 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.1068

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6TB3|1|BQ|C|1076
6TB3|1|BQ|U|1077
6TB3|1|BQ|U|1078
6TB3|1|BQ|A|1079
6TB3|1|BQ|A|1080
6TB3|1|BQ|U|1081
6TB3|1|BQ|U|1082
6TB3|1|BQ|G|1083

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AV

60S ribosomal protein L29

Chain BI

60S ribosomal protein L5

Chain BJ

60S ribosomal protein L21-A