HL_6TB3_071

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUUUUAU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_071 not in the Motif Atlas

Geometric match to HL_4V88_190

Geometric discrepancy: 0.2818

The information below is about HL_4V88_190

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91015.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

6TB3|1|BQ|A|1566
6TB3|1|BQ|U|1567
6TB3|1|BQ|U|1568
6TB3|1|BQ|U|1569
6TB3|1|BQ|U|1570
6TB3|1|BQ|A|1571
6TB3|1|BQ|U|1572

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AH

60S ribosomal protein L25

Chain BS

5.8S ribosomal RNA; 5.8S rRNA

Chain BV

60S ribosomal protein L41-A