HL_6TB3_078
3D structure
- PDB id
- 6TB3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 6TB3|1|BQ|C|1846, 6TB3|1|BQ|G|1848, 6TB3|1|BQ|A|1850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TB3_078 not in the Motif Atlas
- Homologous match to HL_8C3A_041
- Geometric discrepancy: 0.0955
- The information below is about HL_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6TB3|1|BQ|C|1844
6TB3|1|BQ|G|1845
6TB3|1|BQ|C|1846
6TB3|1|BQ|A|1847
6TB3|1|BQ|G|1848
6TB3|1|BQ|C|1849
6TB3|1|BQ|A|1850
6TB3|1|BQ|G|1851
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AL
- 60S ribosomal protein L39
- Chain AX
- 60S ribosomal protein L17-A
- Chain BE
- 60S ribosomal protein L4-A
Coloring options: