HL_6TB3_086

3D structure

PDB id

6TB3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

yeast 80S ribosome in complex with the Not5 subunit of the CCR4-NOT complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

6TB3|1|BQ|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TB3_086 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.1258

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6TB3|1|BQ|G|2253
6TB3|1|BQ|U|2254
6TB3|1|BQ|A|2255
6TB3|1|BQ|A|2256
6TB3|1|BQ|C|2257
6TB3|1|BQ|U|2258
6TB3|1|BQ|A|2259
6TB3|1|BQ|U|2260
6TB3|1|BQ|G|2261
6TB3|1|BQ|A|2262
6TB3|1|BQ|C|2263

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain n

Transfer RNA; tRNA