HL_6TBV_046

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

6TBV|1|23S1|G|386, 6TBV|1|23S1|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_046 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0779

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6TBV|1|23S1|A|382
6TBV|1|23S1|C|383
6TBV|1|23S1|A|384
6TBV|1|23S1|C|385
6TBV|1|23S1|G|386
6TBV|1|23S1|U|387
6TBV|1|23S1|G|388
6TBV|1|23S1|G|389
6TBV|1|23S1|U|390
6TBV|1|23S1|A|391
6TBV|1|23S1|U|392

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L281

50S ribosomal protein L28