HL_6TBV_075

3D structure

PDB id

6TBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

6TBV|1|23S1|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TBV_075 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.0752

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6TBV|1|23S1|A|1630
6TBV|1|23S1|G|1631
6TBV|1|23S1|A|1632
6TBV|1|23S1|G|1633
6TBV|1|23S1|A|1634
6TBV|1|23S1|A|1635
6TBV|1|23S1|U|1636

Current chains

Chain 23S1

23S rRNA

Nearby chains