HL_6TC3_003
3D structure
- PDB id
- 6TC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUGAUCAUGG
- Length
- 11 nucleotides
- Bulged bases
- 6TC3|1|16S1|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TC3_003 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.047
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_31940.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
6TC3|1|16S1|U|12
6TC3|1|16S1|U|13
6TC3|1|16S1|U|14
6TC3|1|16S1|G|15
6TC3|1|16S1|A|16
6TC3|1|16S1|U|17
6TC3|1|16S1|C|18
6TC3|1|16S1|A|19
6TC3|1|16S1|U|20
6TC3|1|16S1|G|21
6TC3|1|16S1|G|22
Current chains
- Chain 16S1
- 16S rRNA
Nearby chains
- Chain S051
- 30S ribosomal protein S5
- Chain S121
- 30S ribosomal protein S12
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