HL_6TC3_015

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_015 not in the Motif Atlas

Geometric match to HL_2ZZN_004

Geometric discrepancy: 0.1725

The information below is about HL_2ZZN_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_64640.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6TC3|1|16S1|G|521
6TC3|1|16S1|C|522
6TC3|1|16S1|A|523
6TC3|1|16S1|G|524
6TC3|1|16S1|C|525
6TC3|1|16S1|C|526
6TC3|1|16S1|G7M|527
6TC3|1|16S1|C|528

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S121

30S ribosomal protein S12