HL_6TC3_020

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

6TC3|1|16S1|C|841, 6TC3|1|16S1|U|842, 6TC3|1|16S1|U|843, 6TC3|1|16S1|G|844, 6TC3|1|16S1|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_020 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1964

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6TC3|1|16S1|C|840
6TC3|1|16S1|C|841
6TC3|1|16S1|U|842
6TC3|1|16S1|U|843
6TC3|1|16S1|G|844
6TC3|1|16S1|A|845
6TC3|1|16S1|G|846

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S181

30S ribosomal protein S18