HL_6TC3_027

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6TC3|1|16S1|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_027 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.0714

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

6TC3|1|16S1|G|1089
6TC3|1|16S1|U|1090
6TC3|1|16S1|U|1091
6TC3|1|16S1|A|1092
6TC3|1|16S1|A|1093
6TC3|1|16S1|G|1094
6TC3|1|16S1|U|1095
6TC3|1|16S1|C|1096

Current chains

Chain 16S1

16S rRNA

Nearby chains

Chain S071

30S ribosomal protein S7