HL_6TC3_083

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6TC3|1|23S1|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_083 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0622

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6TC3|1|23S1|G|1949
6TC3|1|23S1|G|1950
6TC3|1|23S1|U|1951
6TC3|1|23S1|A|1952
6TC3|1|23S1|A|1953
6TC3|1|23S1|G|1954
6TC3|1|23S1|U|1955
6TC3|1|23S1|U|1956
6TC3|1|23S1|C|1957

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain 16S1

Small subunit ribosomal RNA; SSU rRNA

Chain L141

50S ribosomal protein L14