HL_6TC3_090

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_090 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1049

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

6TC3|1|23S1|U|2324
6TC3|1|23S1|G|2325
6TC3|1|23S1|C|2326
6TC3|1|23S1|A|2327
6TC3|1|23S1|A|2328
6TC3|1|23S1|U|2329
6TC3|1|23S1|G|2330
6TC3|1|23S1|G|2331

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L051

50S ribosomal protein L5

Chain L271

50S ribosomal protein L27

Chain PTR1

Transfer RNA; tRNA