HL_6TC3_095

3D structure

PDB id

6TC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli ribosome-SpeFL complex stalled in response to L-ornithine (Replicate 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

6TC3|1|23S1|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TC3_095 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.0722

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6TC3|1|23S1|U|2528
6TC3|1|23S1|G|2529
6TC3|1|23S1|A|2530
6TC3|1|23S1|A|2531
6TC3|1|23S1|G|2532
6TC3|1|23S1|U|2533
6TC3|1|23S1|A|2534
6TC3|1|23S1|G|2535

Current chains

Chain 23S1

23S rRNA

Nearby chains

Chain L061

50S ribosomal protein L6

Chain L361

50S ribosomal protein L36