HL_6TNN_013

3D structure

PDB id

6TNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mini-RNase III (Mini-III) bound to 50S ribosome with precursor 23S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

ACACGUGAAAU

Length

11 nucleotides

Bulged bases

6TNN|1|U|G|431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNN_013 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.1633

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6TNN|1|U|A|427
6TNN|1|U|C|428
6TNN|1|U|A|429
6TNN|1|U|C|430
6TNN|1|U|G|431
6TNN|1|U|U|432
6TNN|1|U|G|433
6TNN|1|U|A|434
6TNN|1|U|A|435
6TNN|1|U|A|436
6TNN|1|U|U|437

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain u

50S ribosomal protein L28