HL_6TNU_020

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_020 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.412

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6TNU|1|2|A|829
6TNU|1|2|U|830
6TNU|1|2|U|831
6TNU|1|2|U|832
6TNU|1|2|U|833
6TNU|1|2|G|834
6TNU|1|2|U|835
6TNU|1|2|U|836
6TNU|1|2|G|837
6TNU|1|2|G|838
6TNU|1|2|U|839
6TNU|1|2|U|840
6TNU|1|2|U|841
6TNU|1|2|C|842
6TNU|1|2|U|843

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

40S ribosomal protein S11-A