HL_6TNU_027

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

6TNU|1|2|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_027 not in the Motif Atlas

Homologous match to HL_4V88_212

Geometric discrepancy: 0.1383

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6TNU|1|2|G|1188
6TNU|1|2|A|1189
6TNU|1|2|C|1190
6TNU|1|2|U|1191
6TNU|1|2|C|1192
6TNU|1|2|A|1193
6TNU|1|2|A|1194
6TNU|1|2|C|1195
6TNU|1|2|A|1196
6TNU|1|2|C|1197

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S16-A

Chain J

40S ribosomal protein S20

Chain M

40S ribosomal protein S29-A

Chain m

Transfer RNA; tRNA

Chain n

Transfer RNA; tRNA