HL_6TNU_057

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

6TNU|1|BQ|U|879, 6TNU|1|BQ|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_057 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0864

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

6TNU|1|BQ|A|876
6TNU|1|BQ|C|877
6TNU|1|BQ|G|878
6TNU|1|BQ|U|879
6TNU|1|BQ|G|880
6TNU|1|BQ|C|881
6TNU|1|BQ|A|882
6TNU|1|BQ|A|883
6TNU|1|BQ|A|884
6TNU|1|BQ|U|885

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AF

60S ribosomal protein L37-A

Chain AX

60S ribosomal protein L17-A

Chain BA

60S ribosomal protein L3