HL_6TNU_086
3D structure
- PDB id
- 6TNU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUAACUAUGAC
- Length
- 11 nucleotides
- Bulged bases
- 6TNU|1|BQ|A|2256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TNU_086 not in the Motif Atlas
- Homologous match to HL_8C3A_049
- Geometric discrepancy: 0.1448
- The information below is about HL_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6TNU|1|BQ|G|2253
6TNU|1|BQ|U|2254
6TNU|1|BQ|A|2255
6TNU|1|BQ|A|2256
6TNU|1|BQ|C|2257
6TNU|1|BQ|U|2258
6TNU|1|BQ|A|2259
6TNU|1|BQ|U|2260
6TNU|1|BQ|G|2261
6TNU|1|BQ|A|2262
6TNU|1|BQ|C|2263
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain g
- 40S ribosomal protein S30-A
- Chain l
- mRNA
- Chain m
- Transfer RNA; tRNA
- Chain n
- Transfer RNA; tRNA
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