HL_6TNU_100

3D structure

PDB id

6TNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6TNU|1|BQ|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TNU_100 not in the Motif Atlas

Homologous match to HL_8C3A_063

Geometric discrepancy: 0.1342

The information below is about HL_8C3A_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6TNU|1|BQ|A|2897
6TNU|1|BQ|G|2898
6TNU|1|BQ|C|2899
6TNU|1|BQ|A|2900
6TNU|1|BQ|G|2901
6TNU|1|BQ|A|2902
6TNU|1|BQ|A|2903
6TNU|1|BQ|U|2904

Current chains

Chain BQ

25S rRNA

Nearby chains

Chain AD

60S ribosomal protein L9-A

Chain AO

Ubiquitin-60S ribosomal protein L40