3D structure

PDB id
6TNU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome in complex with eIF5A and decoding A-site and P-site tRNAs.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGAAUUGCAGAAUUCCGUGAA
Length
21 nucleotides
Bulged bases
6TNU|1|BS|A|80, 6TNU|1|BS|C|84, 6TNU|1|BS|U|86
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6TNU_113 not in the Motif Atlas
Homologous match to HL_8P4V_073
Geometric discrepancy: 0.2466
The information below is about HL_8P4V_073
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_08513.2
Basepair signature
cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

6TNU|1|BS|U|69
6TNU|1|BS|G|70
6TNU|1|BS|A|71
6TNU|1|BS|A|72
6TNU|1|BS|U|73
6TNU|1|BS|U|74
6TNU|1|BS|G|75
6TNU|1|BS|C|76
6TNU|1|BS|A|77
6TNU|1|BS|G|78
6TNU|1|BS|A|79
6TNU|1|BS|A|80
6TNU|1|BS|U|81
6TNU|1|BS|U|82
6TNU|1|BS|C|83
6TNU|1|BS|C|84
6TNU|1|BS|G|85
6TNU|1|BS|U|86
6TNU|1|BS|G|87
6TNU|1|BS|A|88
6TNU|1|BS|A|89

Current chains

Chain BS
5.8S rRNA

Nearby chains

Chain AK
60S ribosomal protein L26-A
Chain AL
60S ribosomal protein L39
Chain BP
60S ribosomal protein L35-A
Chain BQ
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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