HL_6TPQ_001
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- ACCGAUAU
- Length
- 8 nucleotides
- Bulged bases
- 6TPQ|1|U|U|70
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TPQ_001 not in the Motif Atlas
- Geometric match to HL_4P5J_004
- Geometric discrepancy: 0.2906
- The information below is about HL_4P5J_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08550.2
- Basepair signature
- cWW-F-F-F-cSH
- Number of instances in this motif group
- 3
Unit IDs
6TPQ|1|U|A|65
6TPQ|1|U|C|66
6TPQ|1|U|C|67
6TPQ|1|U|G|68
6TPQ|1|U|A|69
6TPQ|1|U|U|70
6TPQ|1|U|A|71
6TPQ|1|U|U|72
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain m
- 50S ribosomal protein L23
- Chain v
- 50S ribosomal protein L29
Coloring options: