HL_6TPQ_005
3D structure
- PDB id
- 6TPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RNase M5 bound to 50S ribosome with precursor 5S rRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.07 Å
Loop
- Sequence
- UGAAUUCAUAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TPQ_005 not in the Motif Atlas
- Homologous match to HL_5J7L_138
- Geometric discrepancy: 0.2269
- The information below is about HL_5J7L_138
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_68257.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
6TPQ|1|U|U|157
6TPQ|1|U|G|158
6TPQ|1|U|A|159
6TPQ|1|U|A|160
6TPQ|1|U|U|161
6TPQ|1|U|U|162
6TPQ|1|U|C|163
6TPQ|1|U|A|164
6TPQ|1|U|U|165
6TPQ|1|U|A|166
6TPQ|1|U|G|167
Current chains
- Chain U
- pre-23S rRNA
Nearby chains
- Chain u
- 50S ribosomal protein L28
Coloring options: