HL_6TPQ_013

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

ACACGUGAAAU

Length

11 nucleotides

Bulged bases

6TPQ|1|U|G|431

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_013 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.147

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6TPQ|1|U|A|427
6TPQ|1|U|C|428
6TPQ|1|U|A|429
6TPQ|1|U|C|430
6TPQ|1|U|G|431
6TPQ|1|U|U|432
6TPQ|1|U|G|433
6TPQ|1|U|A|434
6TPQ|1|U|A|435
6TPQ|1|U|A|436
6TPQ|1|U|U|437

Current chains

Chain U

pre-23S rRNA

Nearby chains

Chain u

50S ribosomal protein L28