HL_6TPQ_042

3D structure

PDB id

6TPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNase M5 bound to 50S ribosome with precursor 5S rRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.07 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

6TPQ|1|U|A|1677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6TPQ_042 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.2229

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6TPQ|1|U|A|1673
6TPQ|1|U|G|1674
6TPQ|1|U|A|1675
6TPQ|1|U|G|1676
6TPQ|1|U|A|1677
6TPQ|1|U|A|1678
6TPQ|1|U|U|1679

Current chains

Chain U

pre-23S rRNA

Nearby chains