HL_6TQA_001
3D structure
- PDB id
- 6TQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray structure of Roquin ROQ domain in complex with a UCP3 CDE2 SL RNA motif
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- AUAUU
- Length
- 5 nucleotides
- Bulged bases
- 6TQA|1|E|U|10, 6TQA|1|E|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6TQA_001 not in the Motif Atlas
- Geometric match to HL_6TQA_003
- Geometric discrepancy: 0.046
- The information below is about HL_6TQA_003
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_56334.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 16
Unit IDs
6TQA|1|E|A|9
6TQA|1|E|U|10
6TQA|1|E|A|11
6TQA|1|E|U|12
6TQA|1|E|U|13
Current chains
- Chain E
- RNA (5'-R(P*GP*GP*UP*GP*CP*CP*UP*AP*AP*UP*AP*UP*UP*UP*AP*GP*GP*CP*AP*CP*(CCC))-3')
Nearby chains
- Chain A
- Roquin-1
- Chain B
- Roquin-1
- Chain C
- Roquin-1
- Chain D
- Roquin-1
- Chain F
- RNA (5'-R(P*GP*GP*UP*GP*CP*CP*UP*AP*AP*UP*AP*UP*UP*UP*AP*GP*GP*CP*AP*CP*(CCC))-3')
Coloring options: