HL_6U48_004

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

6U48|1|CA|U|138, 6U48|1|CA|U|139, 6U48|1|CA|C|140, 6U48|1|CA|G|141

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_004 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3592

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6U48|1|CA|U|137
6U48|1|CA|U|138
6U48|1|CA|U|139
6U48|1|CA|C|140
6U48|1|CA|G|141
6U48|1|CA|A|142

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CU

50S ribosomal protein uL23

Chain CZ

50S ribosomal protein uL29