HL_6U48_006

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6U48|1|CA|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_006 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.0902

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6U48|1|CA|G|194
6U48|1|CA|A|195
6U48|1|CA|A|196
6U48|1|CA|A|197
6U48|1|CA|C|198
6U48|1|CA|A|199
6U48|1|CA|U|200
6U48|1|CA|C|201

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CM

50S ribosomal protein uL15

Chain CY

50S ribosomal protein bL28