HL_6U48_009

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

6U48|1|CA|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1226

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

6U48|1|CA|C|305
6U48|1|CA|U|306
6U48|1|CA|G|307
6U48|1|CA|G|308
6U48|1|CA|A|309
6U48|1|CA|A|310
6U48|1|CA|A|311
6U48|1|CA|G|312

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CV

50S ribosomal protein uL24