HL_6U48_011

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

6U48|1|CA|G|329, 6U48|1|CA|A|330, 6U48|1|CA|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1263

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6U48|1|CA|G|327
6U48|1|CA|U|328
6U48|1|CA|G|329
6U48|1|CA|A|330
6U48|1|CA|C|331
6U48|1|CA|A|332
6U48|1|CA|G|333
6U48|1|CA|C|334
6U48|1|CA|C|335

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CE

50S ribosomal protein uL4

Chain CV

50S ribosomal protein uL24