HL_6U48_013

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6U48|1|CA|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.081

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6U48|1|CA|G|410
6U48|1|CA|G|411
6U48|1|CA|A|412
6U48|1|CA|C|413
6U48|1|CA|C|414
6U48|1|CA|A|415
6U48|1|CA|U|416
6U48|1|CA|C|417

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CM

50S ribosomal protein uL15