HL_6U48_015

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

6U48|1|CA|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_015 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.0973

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6U48|1|CA|C|487
6U48|1|CA|G|488
6U48|1|CA|G|489
6U48|1|CA|C|490
6U48|1|CA|G|491
6U48|1|CA|A|492
6U48|1|CA|G|493

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CT

50S ribosomal protein uL22