HL_6U48_024

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

6U48|1|CA|U|827, 6U48|1|CA|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_024 not in the Motif Atlas

Homologous match to HL_7RQB_025

Geometric discrepancy: 0.0674

The information below is about HL_7RQB_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

6U48|1|CA|U|826
6U48|1|CA|U|827
6U48|1|CA|U|828
6U48|1|CA|A|829
6U48|1|CA|G|830
6U48|1|CA|G|831

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CM

50S ribosomal protein uL15