HL_6U48_028

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

6U48|1|CA|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_028 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.3325

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6U48|1|CA|C|1064
6U48|1|CA|U|1065
6U48|1|CA|U|1066
6U48|1|CA|A|1067
6U48|1|CA|G|1068
6U48|1|CA|A|1069
6U48|1|CA|A|1070
6U48|1|CA|G|1071
6U48|1|CA|C|1072
6U48|1|CA|A|1073
6U48|1|CA|G|1074

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CJ

50S ribosomal protein uL11