HL_6U48_031

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_031 not in the Motif Atlas

Homologous match to HL_5J7L_164

Geometric discrepancy: 0.1188

The information below is about HL_5J7L_164

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6U48|1|CA|U|1222
6U48|1|CA|G|1223
6U48|1|CA|U|1224
6U48|1|CA|G|1225
6U48|1|CA|A|1226
6U48|1|CA|G|1227

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CM

50S ribosomal protein uL15

Chain CR

50S ribosomal protein bL20

Chain CS

50S ribosomal protein bL21