HL_6U48_036

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

6U48|1|CA|A|1453, 6U48|1|CA|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_036 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.1863

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6U48|1|CA|C|1451
6U48|1|CA|G|1452
6U48|1|CA|A|1453
6U48|1|CA|C|1454
6U48|1|CA|G|1455
6U48|1|CA|G|1456
6U48|1|CA|U|1457
6U48|1|CA|U|1458
6U48|1|CA|G|1459

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CO

50S ribosomal protein bL17