HL_6U48_048

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

6U48|1|CA|A|1913, 6U48|1|CA|C|1914

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_048 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.1819

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

6U48|1|CA|G|1910
6U48|1|CA|PSU|1911
6U48|1|CA|A|1912
6U48|1|CA|A|1913
6U48|1|CA|C|1914
6U48|1|CA|3TD|1915
6U48|1|CA|A|1916
6U48|1|CA|PSU|1917
6U48|1|CA|A|1918
6U48|1|CA|A|1919
6U48|1|CA|C|1920

Current chains

Chain CA

23S rRNA

Nearby chains