HL_6U48_049

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6U48|1|CA|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_049 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0833

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6U48|1|CA|G|1949
6U48|1|CA|G|1950
6U48|1|CA|U|1951
6U48|1|CA|A|1952
6U48|1|CA|A|1953
6U48|1|CA|G|1954
6U48|1|CA|U|1955
6U48|1|CA|U|1956
6U48|1|CA|C|1957

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CL

50S ribosomal protein uL14