HL_6U48_054

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

6U48|1|CA|A|2268, 6U48|1|CA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_054 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0775

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6U48|1|CA|C|2264
6U48|1|CA|U|2265
6U48|1|CA|A|2266
6U48|1|CA|A|2267
6U48|1|CA|A|2268
6U48|1|CA|G|2269
6U48|1|CA|A|2270
6U48|1|CA|G|2271
6U48|1|CA|U|2272
6U48|1|CA|A|2273
6U48|1|CA|A|2274
6U48|1|CA|C|2275
6U48|1|CA|G|2276

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CN

50S ribosomal protein uL16

Chain CX

50S ribosomal protein bL27