HL_6U48_059

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

6U48|1|CA|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_059 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0857

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6U48|1|CA|U|2404
6U48|1|CA|G|2405
6U48|1|CA|A|2406
6U48|1|CA|A|2407
6U48|1|CA|U|2408
6U48|1|CA|G|2409
6U48|1|CA|G|2410
6U48|1|CA|A|2411
6U48|1|CA|A|2412
6U48|1|CA|G|2413

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CM

50S ribosomal protein uL15