HL_6U48_061

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

6U48|1|CA|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_061 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1123

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

6U48|1|CA|U|2528
6U48|1|CA|G|2529
6U48|1|CA|A|2530
6U48|1|CA|A|2531
6U48|1|CA|G|2532
6U48|1|CA|U|2533
6U48|1|CA|A|2534
6U48|1|CA|G|2535

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C5

50S ribosomal protein bL36

Chain CG

50S ribosomal protein uL6