HL_6U48_066
3D structure
- PDB id
- 6U48 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 50S with phazolicin (PHZ) bound in exit tunnel
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 6U48|1|CA|G|2751, 6U48|1|CA|C|2755
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6U48_066 not in the Motif Atlas
- Homologous match to HL_5J7L_199
- Geometric discrepancy: 0.0965
- The information below is about HL_5J7L_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_74055.2
- Basepair signature
- cWW-tWH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 7
Unit IDs
6U48|1|CA|C|2745
6U48|1|CA|U|2746
6U48|1|CA|G|2747
6U48|1|CA|A|2748
6U48|1|CA|A|2749
6U48|1|CA|A|2750
6U48|1|CA|G|2751
6U48|1|CA|C|2752
6U48|1|CA|A|2753
6U48|1|CA|U|2754
6U48|1|CA|C|2755
6U48|1|CA|U|2756
6U48|1|CA|A|2757
6U48|1|CA|A|2758
6U48|1|CA|G|2759
Current chains
- Chain CA
- 23S rRNA
Nearby chains
- Chain C5
- 50S ribosomal protein bL36
- Chain CG
- 50S ribosomal protein uL6
- Chain CK
- 50S ribosomal protein uL13
Coloring options: