HL_6U48_075

3D structure

PDB id

6U48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S with phazolicin (PHZ) bound in exit tunnel

Experimental method

ELECTRON MICROSCOPY

Resolution

2.87 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

6U48|1|CA|U|546, 6U48|1|CA|A|547, 6U48|1|CA|G|548, 6U48|1|CA|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6U48_075 not in the Motif Atlas

Homologous match to HL_5J7L_149

Geometric discrepancy: 0.3569

The information below is about HL_5J7L_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_09452.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6U48|1|CA|G|543
6U48|1|CA|C|544
6U48|1|CA|U|545
6U48|1|CA|U|546
6U48|1|CA|A|547
6U48|1|CA|G|548
6U48|1|CA|G|549
6U48|1|CA|C|550

Current chains

Chain CA

23S rRNA

Nearby chains

Chain CK

50S ribosomal protein uL13

Chain CS

50S ribosomal protein bL21