HL_6UCQ_222

3D structure

PDB id

6UCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome recycling complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GG(5MU)(PSU)CGAUUCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UCQ_222 not in the Motif Atlas

Homologous match to HL_5E81_236

Geometric discrepancy: 0.2762

The information below is about HL_5E81_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23827.2

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6UCQ|1|1y|G|52
6UCQ|1|1y|G|53
6UCQ|1|1y|5MU|54
6UCQ|1|1y|PSU|55
6UCQ|1|1y|C|56
6UCQ|1|1y|G|57
6UCQ|1|1y|A|58
6UCQ|1|1y|U|59
6UCQ|1|1y|U|60
6UCQ|1|1y|C|61
6UCQ|1|1y|C|62

Current chains

Chain 1y

P-site and E-site tRNAs

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA