3D structure

PDB id
6UO1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA (containing pseudouridine at the first position of the codon) and deacylated A-, P-, and E-site tRNAs at 2.95A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.95 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
6UO1|1|1a|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6UO1_087 not in the Motif Atlas
Homologous match to HL_4LFB_017
Geometric discrepancy: 0.1302
The information below is about HL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

6UO1|1|1a|G|786
6UO1|1|1a|A|787
6UO1|1|1a|U|788
6UO1|1|1a|U|789
6UO1|1|1a|A|790
6UO1|1|1a|G|791
6UO1|1|1a|A|792
6UO1|1|1a|U|793
6UO1|1|1a|A|794
6UO1|1|1a|C|795
6UO1|1|1a|C|796

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1A
Large subunit ribosomal RNA; LSU rRNA
Chain 1k
30S ribosomal protein S11
Chain 1v
mRNA
Chain 1x
Transfer RNA; tRNA
Chain 1y
Transfer RNA; tRNA

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