HL_6UZ7_006

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

6UZ7|1|2|U|248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UZ7_006 not in the Motif Atlas

Homologous match to HL_4V88_191

Geometric discrepancy: 0.1948

The information below is about HL_4V88_191

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

6UZ7|1|2|G|242
6UZ7|1|2|A|243
6UZ7|1|2|U|244
6UZ7|1|2|G|245
6UZ7|1|2|A|246
6UZ7|1|2|U|247
6UZ7|1|2|U|248
6UZ7|1|2|C|249

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4

Chain G

40S ribosomal protein S6

Chain L

KLLA0A10483p