HL_6UZ7_019

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UZ7_019 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.2665

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6UZ7|1|2|A|828
6UZ7|1|2|U|829
6UZ7|1|2|U|830
6UZ7|1|2|U|831
6UZ7|1|2|U|832
6UZ7|1|2|G|833
6UZ7|1|2|U|834
6UZ7|1|2|U|835
6UZ7|1|2|G|836
6UZ7|1|2|G|837
6UZ7|1|2|U|838
6UZ7|1|2|U|839
6UZ7|1|2|U|840
6UZ7|1|2|C|841
6UZ7|1|2|U|842

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6

Chain L

KLLA0A10483p