HL_6UZ7_088

3D structure

PDB id

6UZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

K.lactis 80S ribosome with p/PE tRNA and eIF5B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

6UZ7|1|5|U|2267

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6UZ7_088 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.118

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6UZ7|1|5|U|2261
6UZ7|1|5|C|2262
6UZ7|1|5|U|2263
6UZ7|1|5|A|2264
6UZ7|1|5|A|2265
6UZ7|1|5|U|2266
6UZ7|1|5|U|2267
6UZ7|1|5|A|2268
6UZ7|1|5|G|2269

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain AV

KLLA0E06997p